Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
METNNHFFYVVKCKDNSWYAGYTNDLHKRVKTHNDGKGAKYTKVRRPVELIFAESFSTKREAMQAEYYFKKLTRKKKELYIEEKRNSKEAVYVKAPNEL
1YD0 Chain:A ((14-89))
---EEPGVYIFKNKGVPIYIGKAKRLSNRLRSYLNPQTEKVFRIGEEADELETIVVMNEREAFILEAN-----------LIKKYRPKYNV---------
General information:
TITO was launched using:
RESULT:
Template:
1YD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6810 for 513 contacts (-13.3/contact) +
2D Compatibility (PS) -8666 + (NN) -5958 + (LL) 2168
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -22766.0 ( -44.38 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1YD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YD0-query.scw
PDB file :
Tito_Scwrl_1YD0.pdb
: