Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPV---DAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTFKNAKKPKEVVKEIPNDRLLIETDCPFLTPHPFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
1ZZM Chain:A ((7-258))
---DTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAENFARVLALAENYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRP-AKVVAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTG-VVHGFSGSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLFNV-
General information:
TITO was launched using:
RESULT:
Template:
1ZZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156114 for 2166 contacts (-72.1/contact) +
2D Compatibility (PS) -27199 + (NN) -15284 + (LL) 308
1D Compatibility (HY) -13200 + (ID) 3900
Total energy: -215389.0 ( -99.44 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_1ZZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZZM-query.scw
PDB file :
Tito_Scwrl_1ZZM.pdb
: