Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTP-SGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK
1X25 Chain:A ((4-122))
----VFTEKAPKPVGPYSQAIKVGNTLYVSGQIPIDPRTNEIVKGDIKVQTRQVLDNIKEIVKAAGFSLSDVAMAFVFLKDMNMFNDFNSVYAEYFKDKPPARVTVEVSRLPKDALIEIAVIC---
General information:
TITO was launched using:
RESULT:
Template:
1X25.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56808 for 889 contacts (-63.9/contact) +
2D Compatibility (PS) -12474 + (NN) -2355 + (LL) 900
1D Compatibility (HY) -13200 + (ID) 3150
Total energy: -87087.0 ( -97.96 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_1X25.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X25-query.scw
PDB file :
Tito_Scwrl_1X25.pdb
: