Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRDGEVILKKYSPISELGDFAKEYADALYDSLGHSVLICDRDVYIAVSGSSKKDYLNKSISEMLERTMDQRSSVLESDAKSVQLVNGIDEDMNSYTVGPIVANGDPIGAVVIFSKDQTMGEVEHKAVETAAGFLARQMEQ
1YSF Chain:A ((3-52))
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVD-DEKIILKKYKP-------------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YSF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9248 for 205 contacts (-45.1/contact) +
2D Compatibility (PS) -5421 + (NN) -2190 + (LL) 8488
1D Compatibility (HY) -7600 + (ID) 1750
Total energy: -17721.0 ( -86.44 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_1YSF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSF-query.scw
PDB file :
Tito_Scwrl_1YSF.pdb
: