Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSIEVGSKLQGKITGITNFGAFVELPGGSTGLVHISEVADNYVKDINDHLKVGDQVEVKVINVEKD-GKIGLSIKKAKDRPQARPRNDFRPKESFEQKMNKFLKDSEDRLSSLKRNTESKRGGRGARRG
4NNK Chain:A ((293-367))
----IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANE--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4NNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44433 for 519 contacts (-85.6/contact) +
2D Compatibility (PS) -7527 + (NN) 1710 + (LL) 2284
1D Compatibility (HY) -7600 + (ID) 1550
Total energy: -57116.0 ( -110.05 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_4NNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NNK-query.scw
PDB file :
Tito_Scwrl_4NNK.pdb
: