Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMKHDIEKVLISEEEIQKKVKELGAELTSEYQDTFPLAIGVLKGALPFMADLIKHIDTYLEMDFMDVSSYGNSTVSSGEVKIIKDLDTSVEGRDILIIEDIIDSGLTLSYLVELFRYRKAKSIKIVTLLDKPSGRKADIKADFVGFEVPDAFVVGYGLDYAERYRNLPYIGVLKPAVYES
2GEB Chain:A ((10-184))
---EDIEEILITEEQLKAKVKELGEMITRDYEGKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKPRSLKICTILDKPERREADVKVDYCGFKIPDKFVVGYGIDYAEKYRNLPFIGVLKPELY--
General information:
TITO was launched using:
RESULT:
Template:
2GEB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145744 for 1357 contacts (-107.4/contact) +
2D Compatibility (PS) -18798 + (NN) -5301 + (LL) 556
1D Compatibility (HY) -22000 + (ID) 5300
Total energy: -196587.0 ( -144.87 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_2GEB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GEB-query.scw
PDB file :
Tito_Scwrl_2GEB.pdb
: