Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVK-QEKIVLVHDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDTIKRVQ-DLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKGFLGTDDASLVEQMEGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
2YCM Chain:A ((3-225))
-SVSVILLAG---------MPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEY--EESIDVDLSFAIPGKERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTL---TLWEMQTPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLK-HPVYVSQGSYTNIKVTTPDDLLLAERILSE-------
General information:
TITO was launched using:
RESULT:
Template:
2YCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119823 for 1643 contacts (-72.9/contact) +
2D Compatibility (PS) -22771 + (NN) -10464 + (LL) 668
1D Compatibility (HY) -19600 + (ID) 3850
Total energy: -175840.0 ( -107.02 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_2YCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YCM-query.scw
PDB file :
Tito_Scwrl_2YCM.pdb
: