Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYVEAAKLVDRSKAYDVSEAVALVKKTNTAKFDATVEVAFRLGVDPRKNDQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADFVGDTDYINKIQQGWFDFDVIVATPDMMGEVG-KIGRVLGPKGLMPNPKTGTVTFEVEKAIGEIKAGKVEYRVDKAGNIHVPIGKVSFEDEKLVENFTTMYDTILKAKPAAAKGVYVKNVAVTSTMGPGVKVDSSTFNVK
4REO Chain:A ((9-229))
--------RALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTVMGPSVRINPHS----
General information:
TITO was launched using:
RESULT:
Template:
4REO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123671 for 1786 contacts (-69.2/contact) +
2D Compatibility (PS) -24038 + (NN) -14985 + (LL) 836
1D Compatibility (HY) -17200 + (ID) 5900
Total energy: -184958.0 ( -103.56 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4REO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4REO-query.scw
PDB file :
Tito_Scwrl_4REO.pdb
: