Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSSAIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQLREANVEFKVYKNTMTRRAVEQAELNGLNDFLTGPNAIAFSTEDVVAPAKVLNDFAKNHEALEIKAGVIEGKVSTVEEVKALAELPSREGLLSMLLSVLQAPVRNLALAAKAVAEQKEEQGA
5GAF Chain:I ((5-126))
----LQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKAGREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYVTEHPGAAARLFKEFAKANAKFEVKAAAFEGELIPASQIDRL----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
5GAF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52324 for 932 contacts (-56.1/contact) +
2D Compatibility (PS) -12935 + (NN) -1441 + (LL) 4060
1D Compatibility (HY) -8000 + (ID) 2250
Total energy: -72890.0 ( -78.21 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_5GAF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5GAF-query.scw
PDB file :
Tito_Scwrl_5GAF.pdb
: