Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIREDEVRKLVGEMREPFLQRPLGELDAVKEIKIKPEKRHISVKVALAKTGTAEQMQIQQEIVNVLKGAGAETVGLRFEELPEETVAKFRAPSAEKKTLLNMDNPPVFLAVASGKGGVGKSTVSVNLAISLARLGKKVGLIDADIYGFSVPDMMGITVR------PTIEG----EKLLPVERFGVKVMSMGFFVEENAPVV----WRGPMLGKMLNNFFHEVE-WGEVDYIVLDLPPGTGDVALDVHTMLPSCKEIIVSTPHPTAAFVAARAGSMAIKTDHEVVGVIENMAYYESAKTGEREYVFGKGGGDKLAEELNVPLLGRIPLKQPDWD-KDQFAPSVYDENHPIGEIYQDIAKKIDAKMSVQV |
4V03 Chain:A ((5-239)) | ------------------------------------------------------------------------------------------------------------IVITSGKGGVGKTTLTANIGTALAKLGKKVLLIDAD---RNLDMILGLENRIVYDILDVLEGRVPYEKALVKDKRGLSLWLLP--------VIDIEKW---------NKTVEEIKNSGNYDYILVDSPAGI-EKGFQIAVS-PADKALIVVNPEVSSIRDADRVIGLLESMDKRNYKVIVNRIKWEMVKRGAMLSV------EDIVDILKAEIIGIIPEEPKLVDFTNRGEPIVLDEKFPASQAIIDTARRL-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4V03.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117433 for 1744 contacts (-67.3/contact) +
2D Compatibility (PS) -21943 + (NN) -4963 + (LL) 10380
1D Compatibility (HY) -10000 + (ID) 3400
Total energy: -147359.0 ( -84.49 by residue)
QMean score : 0.435
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