Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGYRILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVL--SVIQKVDLVIMDVMLPGEDGYQMSAKIKKLGLGIPVIFLSARNDMDSKLQGLQIG-EDYMVKPFDPRELLLRMRNMLEHHYGTFTQ------IKHLYIDAVTKKVFNESLHDEVLFTAIERKIFFYLYENRDSILTKEHFFEYLWQLE-DRNPNIVNVHIKKIRAKINDQAG-EMIENIYGEGYRLNTVVKK
1YS6 Chain:A ((23-230))
------------------LERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSAR--VDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGV--DVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVL------
General information:
TITO was launched using:
RESULT:
Template:
1YS6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116757 for 1491 contacts (-78.3/contact) +
2D Compatibility (PS) -20853 + (NN) -8680 + (LL) 1848
1D Compatibility (HY) -14800 + (ID) 2750
Total energy: -161992.0 ( -108.65 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1YS6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YS6-query.scw
PDB file :
Tito_Scwrl_1YS6.pdb
: