Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMSAGKSYRKKMKQRRMNMKISKYALGILMLSLVFVLSACGNNNSTKESTHDNHSDSSTHEEMDHSGSADVPEGLQESKNPKYKVGSQVIINTSHMKGMKGAEATVTGAYDTTAYVVSYTPTNGGQRVDHHKWVIQEEIKDAGDKTLQPGDQVILEASHMKGMKGATAEIDSAEKTTVYMVDYTSTTSGEKVKNHKWVTEDELSAK
4MDW Chain:A ((59-204))----------------------------------------------------------HEEMDHSGSADVPEGLQES-NP-Y-VGSQVIINTSHM-GM-GAEATVTGAYDTTAYVVSYTPTNGGQRVDHH-WVIQEEI-DAGD-TLQPGDQVILEASHM-GM-GATAEIDSAE-TTVYMVDYTSTTSGE--VNHKWVTEDELSA-


General information:
TITO was launched using:
RESULT:

Template: 4MDW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 653 -46788 -71.65 -351.79
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.86

3D Compatibility (PKB) : -71.65
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.86
QMean score : 0.463

(partial model without unconserved sides chains):
PDB file : Tito_4MDW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4MDW-query.scw
PDB file : Tito_Scwrl_4MDW.pdb: