Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKKTLMIHGGITGDEKTGAVSVPIYQVSTYKQPKAGQ-----HTGYEYSRTANPTRTALEALVTELESGEAGYAFSSGMAAITAVMM-LFNSGDHVVLTDDVYGGTYRVMTKVLNRLGIESTFVDTSSREEVEKAIRPNTKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYLGGHSDVVGGLVVTASKELGEELHFV--QNSTGGVLGPQDSWLLMRGIKTLGLRMEAIDQNARKIASFLENHPAVQTLYYPGSSNHPGHELAKTQGAGFGGMISFDI-GSEERVDAFLGNLKLFTIAESLGAVESLISVPARMTHASIPRERRLELGITDGLIRISVGIEDAEDLLEDIGQALENI
3MKJ Chain:A ((10-395))---NTQIVHAGQQPDPSTGALSTPIFQTSTFVFDSAEQGAARF--------LGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGINVSFVDAAKPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQLGADIVVHSVTKYINGHGDVIGGIIV-GKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRK-


General information:
TITO was launched using:
RESULT:

Template: 3MKJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2112 32472 15.37 88.72
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : 15.37
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.629

(partial model without unconserved sides chains):
PDB file : Tito_3MKJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3MKJ-query.scw
PDB file : Tito_Scwrl_3MKJ.pdb: