Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNRNQAIIASLCYFSVFIAPIIVPIVAYFVVNEKETKRHAIRSLISHIVPFVGWLFLFIALLGGAVAIDGDSLLPVFVIIGGAVIYFL---VVIGIIIWNVIQGIKVLRAA
4LII Chain:A ((463-491))--------------------------------------------------------------------------------GKGVIFYLRDKVVVGIVLWNIFNRMPIAR--


General information:
TITO was launched using:
RESULT:

Template: 4LII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 42 -13479 -320.93 -518.42
target 2D structure prediction score : 0.04
Monomeric hydrophicity matching model chain A : 0.49

3D Compatibility (PKB) : -320.93
2D Compatibility (Sec. Struct. Predict.) : 0.04
1D Compatibility (Hydrophobicity) : 0.49
QMean score : 0.850

(partial model without unconserved sides chains):
PDB file : Tito_4LII.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4LII-query.scw
PDB file : Tito_Scwrl_4LII.pdb: