Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSNANFSILVDFAAGGLVLASVLIVWRRDLRAIVRLLAWQGAALAAIPLLRGIRDNDRALIAVGIAVLALRALVLPWLLARAVGAEAAAQREATPLVNTASSLLITAGLTLTAFAITQPVVNLEPGVTINAVPAAFAVVLIALFVMTTRLHAVSQAAGFLMLDNGIAATAFLLTAGVPLIVELGASLDVLFAVIVIGVLTGRLRRIFGDADLDKLRELRD |
| 2MKV Chain:A ((25-47)) | -------------------------------------------------------------------------------------------------------------------------------RNGGLIFAGLAFIVGLLILLSRR---------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2MKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -5585 for 82 contacts (-68.1/contact) +
2D Compatibility (PS) -2415 + (NN) -1573 + (LL) 18244
1D Compatibility (HY) -1600 + (ID) 150
Total energy: 6921.0 ( 84.40 by residue)
QMean score : -0.166
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