Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVLVDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYY--GTILTGDQYLHCERTRNRL--HHELGGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
3DP9 Chain:A ((2-230))
---KIGIIGAMQQEVAILKDLIEDVQEVNQAGCTFYSGQIQGVDVVLLQSGIGKVSAALGTALLISQYAPDVVINTGSAGGFDASLNVGDVVISSEVRHHD----ADVTAFGYEIGQMA--------GQPAAFKADEKL-----------MTVAEQALAQLPNTHAVRGLICTGDAFV-CTAERQQFIRQHFPSVVAVEMEASAIAQTCHQFKVPFVVVRAISDVADKESPLSFEEFLPLAAKSSSAMVLKMVELL---
General information:
TITO was launched using:
RESULT:
Template:
3DP9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -181904 for 1991 contacts (-91.4/contact) +
2D Compatibility (PS) -23780 + (NN) -7916 + (LL) 2384
1D Compatibility (HY) -17600 + (ID) 3850
Total energy: -232666.0 ( -116.86 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_3DP9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP9-query.scw
PDB file :
Tito_Scwrl_3DP9.pdb
: