Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSHTDLTPCTRVLASSGTVPIAEELLARVLEPYSCKGCRYLIDAQYSATEDSVLAYGNFTIGESAYIRSTGHFNAVELILCFNQLAYSAFAPAVLNEEIRVLRGWSIDDYCQHQLSSMLIRKASSRFRKPLNPQKFSARLLCRDLQVIERTWRYLKVPCVIEFWDENGG-AASGEIELAALNIP
1Q4T Chain:A ((47-148))
-------------------------------------------------------TASVEVT-DTLRQRWGLVHGGAYCALAEMLATEATVAVVH-----------------EKGMMAVGQSNHTSFFRPVKEGHVRAEAVRIHAG-----STT--WFWDVSLRDDAGRLCAVSSMSIAVRP--
General information:
TITO was launched using:
RESULT:
Template:
1Q4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81917 for 741 contacts (-110.5/contact) +
2D Compatibility (PS) -10631 + (NN) 341 + (LL) 6204
1D Compatibility (HY) -400 + (ID) 600
Total energy: -87003.0 ( -117.41 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_1Q4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q4T-query.scw
PDB file :
Tito_Scwrl_1Q4T.pdb
: