Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVAERAGHQWCLFLDRDGVINRQVVGDYVRNWRQFEWLPGAARALKKLRAWAPYIVVVTNQQGVGAGLMSAVDVMVIHRHLQMQLASDGVLIDGFQVCPHHRS-------QRCGCRKPRPGLVL---DWLGRHPDSEPLLSIVVGDSLSDLELAHNVAAAAGACASVQIG---GASSGGVADASFDSLWEFAVAVGHARGERG
3L8G Chain:A ((8-183))
-----------IFLDRDGTIN--VDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL--HIDM--AASYMVGDKLEDMQAA--VAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAI--------
General information:
TITO was launched using:
RESULT:
Template:
3L8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129825 for 1323 contacts (-98.1/contact) +
2D Compatibility (PS) -17744 + (NN) -9350 + (LL) 1148
1D Compatibility (HY) -12800 + (ID) 3200
Total energy: -171771.0 ( -129.83 by residue)
QMean score : 0.338
(partial model without unconserved sides chains):
PDB file :
Tito_3L8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8G-query.scw
PDB file :
Tito_Scwrl_3L8G.pdb
: