Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAILRGRAPLRLGLGGGGTDVEPYSSQFGGRILSVTIDKYAYAFAERGTGDEIAFRSPDRDRAGQASIDDLASLEE----DFPLHVAVYRRVIAEFN--GGTPFPLQLATQVDAPPGSGLGSSSALVVAMLLTTCALIGSSPGPYELARLAWEIERVDLGMAGGWQDHYAAAFGGFNFMESRPNGEVVVNPLRIRREVIAELE------ASLLLYFGGVSRLSSEVIADQQRNVVERDADALAATHSICAEALEMKDLLVVGDIPGFADSLLRGWQAKKRTSTRISNPAIEHAYQVAQSSGMVAGKVSGAGGGGFLMMIVDPRRRIEVARSLERECGGSVAPCLFTKGGAVTWHIPESTAPVRRGVADAVASALGNAGILLCAGCVLATSHSTWRVPV |
| 1VIS Chain:A ((21-288)) | ---------------------------YGYRAISMAIDLTSTIEIKETQEDEIILNLNDLNKSLGLNLNEIKNINPNNFGDFKYCLCAIKNTLDYLNIEPKTGFKINISSKI--PISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKAS-ITDTSTITYKGI--LEIKNNK---------FRKIKGEFEEFLKNCKFLIVYAEKRKKKTAELVNEVAK--IENKDEIFKEIDKVIDEALKIKNKEDFGKLMTKNHELLKKLN--------ISTPKLDRIVDIGNRFGFGA-KLTGAGGGGCVIILV------------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VIS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -126805 for 2025 contacts (-62.6/contact) +
2D Compatibility (PS) -27928 + (NN) -13280 + (LL) 6996
1D Compatibility (HY) -16000 + (ID) 2850
Total energy: -179867.0 ( -88.82 by residue)
QMean score : 0.421
|
|
|