Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVHAW
3TD6 Chain:A ((1-184))
MAEPLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAALGTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPA-------
General information:
TITO was launched using:
RESULT:
Template:
3TD6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106221 for 1531 contacts (-69.4/contact) +
2D Compatibility (PS) -19856 + (NN) -7670 + (LL) 676
1D Compatibility (HY) -22400 + (ID) 9200
Total energy: -164671.0 ( -107.56 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_3TD6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TD6-query.scw
PDB file :
Tito_Scwrl_3TD6.pdb
: