Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAATRNGRIGVIGTRATITSHAYQDAF-AAARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQPVHPSRIH
2VVT Chain:A ((27-286))
-------IGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTP-----PHEFYTTGSAKMFEEIASSWLGIENLKAQQIH-----
General information:
TITO was launched using:
RESULT:
Template:
2VVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -244470 for 2300 contacts (-106.3/contact) +
2D Compatibility (PS) -27892 + (NN) -12176 + (LL) 252
1D Compatibility (HY) -22800 + (ID) 5200
Total energy: -312286.0 ( -135.78 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_2VVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVT-query.scw
PDB file :
Tito_Scwrl_2VVT.pdb
: