Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTAGSDLDDFRGLLAKAFDERVVAWTAEAEAQERFP--RQLIEHLGVCGVFDAKWATDARPDVGKLVELAFALGQLASAGIGVGVSL---HDSAIAILRRFGKSDYLRDICDQAIRGAAVLCIGASEESGGSDLQIVETEIRSRDGGFEVRGVKKFVSLSPIADHIMVVARS-VDHDPTSRHGNVAVVAVPAAQVSVQTPYRKVGAGPLDTAAVCI-DTWVPADALVARAGTGLAAISWGLAHERMSIAGQIAASCQRAIGITLARMMSRRQFGQTLFEHQALRLRMADLQARVDLLRYALHGIA---EQGRLELRTAAAVKVTAARLGEEVISECMHIFGGAGYLVDETTLGKWWRDMKLARVGGGTDEVLWELVAAGMTPDHDGYAAVVGASKA |
1IVH Chain:A ((20-380)) | ---------LRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQCFGGNGY-INDFPMGRFLRDAKLYEIGAGTSEV------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1IVH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233285 for 3105 contacts (-75.1/contact) +
2D Compatibility (PS) -38709 + (NN) -23958 + (LL) 2004
1D Compatibility (HY) -18400 + (ID) 4250
Total energy: -316598.0 ( -101.96 by residue)
QMean score : 0.451
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