Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKPTSAGQADDALVRLARERFDLPDQVRRLARPPVPSLEPPYGLRVAQLTDAEMLAEWMNRPHLAAAW--EYDWP--ASRWRQHLNAQLEGTYSLPLIGSWHGTDGGYLELYWAAKDLISHY-YDADPYDLGLHAAIADLSKVNRGFGPLLLPRIVASVFANEPRCRRIMFDPDHRNTATRRLCEWAGCKFLGEHDTTNRRMALYALEAPTTAA
2VQY Chain:A ((28-180))
--------------------------------------------LRLMTEHDLAMLYEWLNRSHIVEWWGG--ARPTLADVQEQYLPSVLAQESVTPYIAMLNGEPIGYAQSYVALGSGDGWWEEETDPGVRGIDQLLANASQLGKGLGTKLVRALVELLF-NDPEVTKIQTDPSPSNLRAIRCYEKAGFERQGTVTT-----------------
General information:
TITO was launched using:
RESULT:
Template:
2VQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79326 for 1031 contacts (-76.9/contact) +
2D Compatibility (PS) -15439 + (NN) -4749 + (LL) 4092
1D Compatibility (HY) -5200 + (ID) 2250
Total energy: -102872.0 ( -99.78 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_2VQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VQY-query.scw
PDB file :
Tito_Scwrl_2VQY.pdb
: