Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTPRRHCRRIAVLAAVSIAATVVAGCSSGSKPSGGPLPDAKPLVEEATAQTKALKSAHMVLTVNGKIPGLSLKTLSGDLTTNPTAATGNVKLTLGGSDIDADFVVFDGILYATLTPNQWSDFGPAADIYDPAQVLNPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQIAPPFNATQPVPATVWIQET-GDHQLAQAQLDRGSGNSVQMTLSKWGEKVQVTKPPVS
3MH9 Chain:C ((36-236))
-----------------------------------GPLPDAKPLVEEATAQTKALKSAHMVLTVNGKIPGLSLKTLSGDLTTNPTAATGNWKLTLGGSDIDADFVVFDGILYATLTPNQWSDFGPAADIYDPAQVLNPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQIAPPFNATQPVPATVWIQETGD-HQLAQAQLDRGSGNSVQMTLSKWGEKVQVTKPPVS
General information:
TITO was launched using:
RESULT:
Template:
3MH9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88040 for 1564 contacts (-56.3/contact) +
2D Compatibility (PS) -22355 + (NN) -16297 + (LL) 2236
1D Compatibility (HY) -22000 + (ID) 9900
Total energy: -156356.0 ( -99.97 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_3MH9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MH9-query.scw
PDB file :
Tito_Scwrl_3MH9.pdb
: