Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITATDLEVRAGARILLAPDGPDLRVQPGDRIGLVGRNGAGKTTTLRILAGEVEP--------YAGSV--TRAGEIGYLPQDPKVGDLDVLARDRVLSARGLDVLLTDLEKQQALMAEVADEDERDRAIRRYGQLEERFVALGGYGAESEAGRICASLGLPERVLTQRLRTLSGGQRRRVELARILFAASESGAGNSTTLLLDEPTNHLDA-DSLGWLRDFLRLHTGG--LVVISHNV---DLVADVVNKVWFLDAVRGQVDVYNMGWQRYVDARATDEQRRIRERANAERKAAALRAQAAKLGAKATKAVAAQNMLRRADRMMAALDEERVADKVARIKFPTP---AACGRTPLVANG-LGKTYGS--LEVFTGVDLAIDRGSRVVILGLNGAGKTTLLRLLAGVEQPDTGVLEPGYGLRIGYFAQEHDTLDNDATVWENVRHAAPDAGEQDLRGLLGAFMFTGPQLEQPAGT----------LSGGEKTRLALAGLVASTANVLLLDEPTNNLDPASREQVLDALRSY----RGAVVLVTHDPGAAAALGPQRVVLLPDGTEDYWSDEYRDLIELA |
1YQT Chain:A ((44-461)) | -------------------------VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIR-----PVVKPQYVDLIPKAVKGKVIELLKKADET---------GKLEE----------------VVKALEL-ENVLEREIQHLSGGELQRVAIAAALLR-------NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVY------GEPGVYGIFSQ-----------------------------------PKGTRN-GINEFLR------GYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPG---EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE--WDLTVAYKPQ-YIKADYEGTVYELL--SKIDASKLNSN-------FYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD---------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YQT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116282 for 2947 contacts (-39.5/contact) +
2D Compatibility (PS) -40996 + (NN) -20955 + (LL) 11332
1D Compatibility (HY) -31600 + (ID) 6950
Total energy: -205451.0 ( -69.72 by residue)
QMean score : 0.350
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