Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDHKVPFNRPYMTGRELAYIAEAHSCGHLAGDGPFTRRSHAWLEQQTGCRKALLTPSCTAALEMMALLLDIEEGDEVILPSYTFVSTANAFVLRGGVPVFVDIRPDTLNIDETRIVDAITPRTKAIVPVHYAGVACEMDAIMKIATHHNLAVVEDAAQGAMASYRGRALGSIGDLGALSFHETKNVISGEGGALLVNS
1MDO Chain:A ((11-213))
-----LPFSRPAMGAEELAAVKTVLDSGWIT-TGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKGRHIGARG-TAIFSFHAIKNITCAEGGIVVTDN
General information:
TITO was launched using:
RESULT:
Template:
1MDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120234 for 1514 contacts (-79.4/contact) +
2D Compatibility (PS) -20963 + (NN) -9104 + (LL) -36
1D Compatibility (HY) -10800 + (ID) 4000
Total energy: -165137.0 ( -109.07 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_1MDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MDO-query.scw
PDB file :
Tito_Scwrl_1MDO.pdb
: