Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADIPYGTDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGDYACTAEPDLFMHRENAHPTGEMDLRGVRWVAVSESEKDRRL-----------AESTIKRLTGGDT-IRARKMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRI-RVVPFEVVIPADEQDRELDARLQLEADSILSWAVAGWSDYQRIGLSQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEGVPEISRKAFGQSLDTHGYPVTDKARDGRWRAGIAVRGADDFDD |
| 4GDF Chain:A ((287-419)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLP--LD---RLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQI-FPPGIVTMNE-Y---SVPKTLQARFVKQIDFRP--------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4GDF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -18614 for 854 contacts (-21.8/contact) +
2D Compatibility (PS) -12291 + (NN) 1694 + (LL) 21576
1D Compatibility (HY) -800 + (ID) 600
Total energy: -9035.0 ( -10.58 by residue)
QMean score : 0.135
|
|
|