Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSPATVLDSILEGVRADVAAREASVSLSEI--KAAAAAAPPPL-------DVMAALREPGIGVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDC---FARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGTHPSCPKPAR |
1VC4 Chain:A ((12-253)) | --------------------------LGEIARKRASEVAPYPLPEPPSVPSFKEALLRPGLSVIAEVKRQSPSEGLIREV-DPVEAALAYARGGARAVSVLTEPHRFGGSLLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLGE-LTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGYSRKEELKALEGL-FDAVLIGTSLMRAPDLEAALRELV------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1VC4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -154145 for 1979 contacts (-77.9/contact) +
2D Compatibility (PS) -25015 + (NN) -8953 + (LL) 2116
1D Compatibility (HY) -20400 + (ID) 5700
Total energy: -212097.0 ( -107.17 by residue)
QMean score : 0.554
|
|
|