Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGPTTDADAAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAP---IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLGTPKDT
2TMY Chain:A ((3-116))
-------------KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIM--KIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALN-------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2TMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72893 for 872 contacts (-83.6/contact) +
2D Compatibility (PS) -12547 + (NN) -8294 + (LL) 7532
1D Compatibility (HY) -11200 + (ID) 2550
Total energy: -99952.0 ( -114.62 by residue)
QMean score : 0.708
(partial model without unconserved sides chains):
PDB file :
Tito_2TMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TMY-query.scw
PDB file :
Tito_Scwrl_2TMY.pdb
: