Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVRLDPSRCVGHAQCYAVDPDLFPIDDSGNSILAEHEVRPEDM-QLTRDGVAACPEMALILEEDDAD
3PNI Chain:A ((2-65))
WKVSVDQDTCIGCAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAITIEE----
General information:
TITO was launched using:
RESULT:
Template:
3PNI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32779 for 438 contacts (-74.8/contact) +
2D Compatibility (PS) -6550 + (NN) -2478 + (LL) -84
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -47641.0 ( -108.77 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_3PNI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PNI-query.scw
PDB file :
Tito_Scwrl_3PNI.pdb
: