Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLTTMIKTAVAVVAMAAIATFAAPVALAAYPITGKLGSELTMTDTVGQVVLGWKVSDLKSSTAVIPGYPVAGQVWEATATVNAIRGSVTPAV-SQFNARTADGINYRVLWQAAGPDTISGATIPQGEQSTGKIYFDVTGPSPTIVAMNNGMEDLLIWEP |
3NRF Chain:A ((30-92)) | ----------------------------------------------------------------------------AFKVRLVNAAKSEISLKNSCLVAQSAAGQSFRLDTV---DEELTADTLKPGASVEGDAIFASEDDA------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NRF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11238 for 335 contacts (-33.5/contact) +
2D Compatibility (PS) -6690 + (NN) -3741 + (LL) 7948
1D Compatibility (HY) 0 + (ID) 500
Total energy: -14221.0 ( -42.45 by residue)
QMean score : 0.429
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