Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLDLFDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLD----ALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEP-YTEYQPL--WEPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGYTCP
1VL8 Chain:A ((17-266))
------FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGV---ETMAFRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAF-SLLRESDNPSIINIGSLTVEEVTMPN-ISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGWTA-
General information:
TITO was launched using:
RESULT:
Template:
1VL8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -187671 for 2120 contacts (-88.5/contact) +
2D Compatibility (PS) -26577 + (NN) -14475 + (LL) 320
1D Compatibility (HY) -17200 + (ID) 4600
Total energy: -250203.0 ( -118.02 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1VL8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VL8-query.scw
PDB file :
Tito_Scwrl_1VL8.pdb
: