Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDYLRDAAEIYRRSFAVIRAEADLARFPADVARVVVRLIHTCGQVDVAEHVAYTDDVVARAGAALAAGAPVLCDSSMVAAGITTSRLPADN-QIVSLVADPRATELAARRQTTRSAAGVELCA--ERLPGAVLAIGNAPTALFRLLELVDEGAPPPAAVLGGPVGFVGSAQAKEELIE----RPRGMSYLVVRGRRGGSAMAAAAVNAIASDRE
2AFV Chain:A ((14-213))
----------IENKSFSIIDEEAGPHSFAQEEWEVVRRIIHATADFDYKNITKIHPQAIDSGIQALKKGCPIVCDVQMILSGLNPERLKVYGCKTYCFISDEDVIENAKRKNSTRAIESIQKANSFNLLNESIIVIGNAPTALLEIEKLIRQEGIKPALIVGVPVGFVSAKESKESILKLEYYNVTSIPYILTMGRKGGSTIAVAILHAL-----
General information:
TITO was launched using:
RESULT:
Template:
2AFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140784 for 1620 contacts (-86.9/contact) +
2D Compatibility (PS) -21361 + (NN) -12628 + (LL) 1236
1D Compatibility (HY) -14000 + (ID) 2900
Total energy: -190437.0 ( -117.55 by residue)
QMean score : 0.629
(partial model without unconserved sides chains):
PDB file :
Tito_2AFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2AFV-query.scw
PDB file :
Tito_Scwrl_2AFV.pdb
: