Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDPLHVTFVCTGNICRSPMAEKMFAQQLRHRGLGDAVRVTSAGTGNWHVGSCADERAAGVLRAHGYPTDHRAAQVGTEHLAA-DLLVALDRNHARLL----RQLGVEAARVRMLRSFDPRSGTHALDVEDPYYGDHSDFEEVFAVIESALPGLHDWVDERLARNGPS
5PNT Chain:A ((8-142))
------VLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQK---QLIIEDPYYGNDSDFETVY------------------------
General information:
TITO was launched using:
RESULT:
Template:
5PNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64000 for 998 contacts (-64.1/contact) +
2D Compatibility (PS) -14368 + (NN) -7780 + (LL) 1352
1D Compatibility (HY) -13600 + (ID) 2600
Total energy: -100996.0 ( -101.20 by residue)
QMean score : 0.464
(partial model without unconserved sides chains):
PDB file :
Tito_5PNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5PNT-query.scw
PDB file :
Tito_Scwrl_5PNT.pdb
: