Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALRRRHEPDGWPFSQRSEKPNAVRHAVRCSAVSAAASTANGTPVNWVSGRVTRAMGVHRQTRGGVASVHADSLRGAVLVHGQLRNSIPISANVPASGANTKSSIAH
1VSQ Chain:C ((15-21))
------------------------------------------------------------------------------LIHGQVA----------------------
General information:
TITO was launched using:
RESULT:
Template:
1VSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -430 for 15 contacts (-28.7/contact) +
2D Compatibility (PS) -646 + (NN) 1131 + (LL) 5240
1D Compatibility (HY) -1200 + (ID) 200
Total energy: 3895.0 ( 259.67 by residue)
QMean score : -0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1VSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VSQ-query.scw
PDB file :
Tito_Scwrl_1VSQ.pdb
: