Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTETSPETPETTEAIRAVEAFLNALQNEDFDTVDAALGDDLVYENVGFSRIRGGRRTATLLRRMQGRVGFE-VKIHRIGADGAAVLTERTDALIIGPL--RVQFWVCGVFEVDDGRITLWRDYFDVYDMFKGLLRGLVALVVPSLKATL
4XDV Chain:C ((32-142))
------------------KIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGFFTVVSVDAVETFHIGSSNGLVYTERVDVLRALPTGKSYNFSILGVFQLTEGKITGWRDYFDL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4XDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55618 for 742 contacts (-75.0/contact) +
2D Compatibility (PS) -11953 + (NN) -4955 + (LL) 3392
1D Compatibility (HY) -8400 + (ID) 1700
Total energy: -79234.0 ( -106.78 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_4XDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XDV-query.scw
PDB file :
Tito_Scwrl_4XDV.pdb
: