Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSSEPAHGATPKRSPSEGSADNAALCDALAVEHATIYGYGIVSALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAG------YQLPMQVSSAADAARLA-----VRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRVLGAWPITAAFPGGDE
3PYZ Chain:A ((350-433))
--------------------------------------------------------------------VVGMLSDKDIAGTLACLSERVDEWYCAPLEGPRGASAGQLAEHLVSARQFSDVETAWRQAMQDADTQDVVIVCGSFHTVAHVMA---------------------
General information:
TITO was launched using:
RESULT:
Template:
3PYZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42894 for 512 contacts (-83.8/contact) +
2D Compatibility (PS) -7754 + (NN) 1036 + (LL) 4120
1D Compatibility (HY) -3200 + (ID) 1200
Total energy: -49892.0 ( -97.45 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_3PYZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PYZ-query.scw
PDB file :
Tito_Scwrl_3PYZ.pdb
: