Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGLDAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDDVAAVRTGLAEFWKEQTCHQPSLQSL
2XOD Chain:A ((2-112))
-------LVAYDSMTGNVKRFIHKLNMPAVQIG--EDLVIDEDFILITYTTGFGN----------VPERVLEFL--ERNNEKLKGVSASGNRNWGDMFGASADKISAKYEVPIVSKFELSGTNNDV--------EYFKER----------
General information:
TITO was launched using:
RESULT:
Template:
2XOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104620 for 875 contacts (-119.6/contact) +
2D Compatibility (PS) -11701 + (NN) -3801 + (LL) 1512
1D Compatibility (HY) -10000 + (ID) 2400
Total energy: -131010.0 ( -149.73 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_2XOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XOD-query.scw
PDB file :
Tito_Scwrl_2XOD.pdb
: