Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQQWVDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTFAQCSMLGS-----VFVACRLRPLTLDDVDFTLAVLGGNDLRGL-----NLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLAGG
4YDT Chain:A ((46-234))
--ELTNASLTGADLSYANLHHANLSRANLRSADLRNANLSHANLSGANLEEANLEAANLRGADLHEANLSGADLQEANLTQANLKDANLSDANLEQADLAGADLQGAVLDGANLHGANLNNANLSEAMLTRANLEQADLSGARTTGARLDDADLRGATVDPVLWRTASLVGARVDVDQAVAFAAAHGLCLA--
General information:
TITO was launched using:
RESULT:
Template:
4YDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166222 for 1578 contacts (-105.3/contact) +
2D Compatibility (PS) -18154 + (NN) 2671 + (LL) -16
1D Compatibility (HY) -6800 + (ID) 4200
Total energy: -192721.0 ( -122.13 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4YDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YDT-query.scw
PDB file :
Tito_Scwrl_4YDT.pdb
: