Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLECNPQYDDYQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRYIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG
4KT8 Chain:A ((1-296))
MNLVSEKEFLDLPLVSVAEIVRCRGPKVSVFPFDGTRRWFHLE-------FQQAALRQSIRILKMLFEHGIETVISPIFSDDLLDRGDRFIVQALEGMALLANDEEILSFYKEHEVHVLFYGDYKKRLPSTAQGAAVVKSFDDLTISTSSNTEHRLCFGVFGNDAAESVAQFSISWNETHGKPPTRREIIEGYYGEYVDKADMFIGFGRFSTFDFPLLSSGKTSLYFTVAPSYYMTETTLRRILYDHIYLRHFRPKPDYSAMSADQLNVLRNRYRAQPDRVFGVGCVHDGIWFAEG
General information:
TITO was launched using:
RESULT:
Template:
4KT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -163879 for 2093 contacts (-78.3/contact) +
2D Compatibility (PS) -32173 + (NN) -23248 + (LL) -104
1D Compatibility (HY) -44000 + (ID) 14350
Total energy: -277754.0 ( -132.71 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4KT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KT8-query.scw
PDB file :
Tito_Scwrl_4KT8.pdb
: