Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVARHRAQAAADLASLAAAARLPSGLAAACARATLVARAMRVEHAQCRVVDLDVVVTVEVAVAFAGVATATARAGPAKVPTTPG
1YSR Chain:A ((116-136))
-----------------------------LALVAQQAQLHGGTASLENSP----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YSR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3312 for 78 contacts (-42.5/contact) +
2D Compatibility (PS) -2260 + (NN) -355 + (LL) 5432
1D Compatibility (HY) 2400 + (ID) 100
Total energy: 1805.0 ( 23.14 by residue)
QMean score : 0.078
(partial model without unconserved sides chains):
PDB file :
Tito_1YSR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YSR-query.scw
PDB file :
Tito_Scwrl_1YSR.pdb
: