Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAISFRPTADLVDDIGPDVRSCDLQFRQFGGRSQFAGPISTVRCFQDNALLKSVLSQPSAGGVLVIDGAGSLHTALVGDVIAELARSTGWTGLIVHGAVRDAAALRGIDIGIKALGTNPRKSTKTGAGERDVEITLGGVTFVPGDIAYSDDDGIIVV
2YJV Chain:A ((5-153))
-------TSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFEDNGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDLEELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIIL-
General information:
TITO was launched using:
RESULT:
Template:
2YJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100288 for 1282 contacts (-78.2/contact) +
2D Compatibility (PS) -17125 + (NN) -14867 + (LL) 812
1D Compatibility (HY) -16800 + (ID) 3400
Total energy: -151668.0 ( -118.31 by residue)
QMean score : 0.823
(partial model without unconserved sides chains):
PDB file :
Tito_2YJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YJV-query.scw
PDB file :
Tito_Scwrl_2YJV.pdb
: