Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSLLILDRDGVINLDSDDYIKTLDEWIPIPSSIEAIARLSQAGWTVAVATNQSGIARGYYDLAVLEAMHARLRELVAEQGGEVGLIVYCPHGPDDG-------CDCRKPKPGMLRQIGEHYGVDLSGIWFVGDSIGDLEAARAVDC-QPVLVKTGKGVRTLGKPLPEGTLIFDDLAAVASALLQ
3L8F Chain:A ((8-161))
-----IFLDRDGTINVDHG-YVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIKKQ-
General information:
TITO was launched using:
RESULT:
Template:
3L8F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91210 for 1143 contacts (-79.8/contact) +
2D Compatibility (PS) -17087 + (NN) -16218 + (LL) 452
1D Compatibility (HY) -13600 + (ID) 2900
Total energy: -140563.0 ( -122.98 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_3L8F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L8F-query.scw
PDB file :
Tito_Scwrl_3L8F.pdb
: