Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNQRQYPRTPLKCRIRISHPLFGELM--AQTRDLSDTGVYVKHPDLT-----QLPTGSVVTGQVQDLPIDAPILQMEVVRVDAEGVGLRFLSEA
2L1T Chain:A ((29-88))
-----------------------GSFDGTAAITSLKGSLAWLELFGAEQPPPNTLSEGAEVSVSVW-TGGALCRCDGRVETLRDDRQFAIRLVGR
General information:
TITO was launched using:
RESULT:
Template:
2L1T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6793 for 227 contacts (-29.9/contact) +
2D Compatibility (PS) -5754 + (NN) -2586 + (LL) 1368
1D Compatibility (HY) -400 + (ID) 400
Total energy: -14565.0 ( -64.16 by residue)
QMean score : 0.200
(partial model without unconserved sides chains):
PDB file :
Tito_2L1T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L1T-query.scw
PDB file :
Tito_Scwrl_2L1T.pdb
: