Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNRLPTCLLAATLFLGSASLYAEDPACARVRLADPGWS-DIAVTNATAAFLLESLGYQVKIDTLSVPIIYGGLRDGQVDAFLGGWMPAHQDYHDKFVASGQVERLGRNLDGTRFTLAVPRYVWDAGVHRFEDLAAQGQRFNRKLYGIGSGAPANQSIQKMIDANQFGLG-DWKLVESSEQAMLAELGRAEKRQRWLVFLGWTPHPMNIRHDLRYLEGGEQYFGDRGQVYTLARKGYAAQCPNPARLLANLRFDLDMENRLMSDALEGTATPASATRAWLKANPRVLEAWLQGVTSRDGGDALAAVRGQP |
| 3TMG Chain:A ((18-271)) | -----------------------------VKIGYVNWGGETAATNVLKV-VFEKMGYNAEIFSVTTSIMYQYLASGKIDGTVSSWVPTADKFYYEKLKTKFVD-LGANYEGTIQGFVVPSYV---PISSISELKGKGDKFKNKMIGIDAGAGTQIVTEQAL--NYYGLSKEYELVPSSESVMLASLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDDPDLIMGGIESVHTLVRLGLENDDFDAYYVFDHFYWSDDLILPLMDKNDKEPGKEYRNAVEFVEKNKEIVKTWVPEKYKTLFD---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TMG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -135368 for 2159 contacts (-62.7/contact) +
2D Compatibility (PS) -27037 + (NN) -8925 + (LL) 2500
1D Compatibility (HY) -20800 + (ID) 3300
Total energy: -192930.0 ( -89.36 by residue)
QMean score : 0.556
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