Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVLTRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLANGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI
1YIO Chain:A ((7-200))
---VFVVDDDMSVREGLRNLLRSAGFE-VETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQ------LNAERRQARETQDQLEQLFSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKY---
General information:
TITO was launched using:
RESULT:
Template:
1YIO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108823 for 1408 contacts (-77.3/contact) +
2D Compatibility (PS) -21213 + (NN) -10199 + (LL) 1092
1D Compatibility (HY) -13600 + (ID) 2900
Total energy: -155643.0 ( -110.54 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_1YIO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YIO-query.scw
PDB file :
Tito_Scwrl_1YIO.pdb
: