Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDAALRYPNILFDLDGTLTDPREGITRSVQFALARLGIDEPDLARLEHFIGPPLLQCFMQTYGFDEARAWEAVNHYRERFRVTGLYENRVFDGIPELLEALVGRGHTLYVATSKPGVFAREIARHFAFDRHFKAIYGSELDGTRTHKEELIRHLLDSEGLAAEHCLMIGDRMHDLLGASRNGVACIGVGYGFGSEDELRAHQPTHYCADLAALRQVLESH
2NYV Chain:A ((6-211))
----------ILFDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNVTKYIGGGV-RALLEKVLKDKFRE-EYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAGTKTALALWGYV---KLNSQIPDFTLSRPSDLVKLMDNH
General information:
TITO was launched using:
RESULT:
Template:
2NYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138812 for 1705 contacts (-81.4/contact) +
2D Compatibility (PS) -22020 + (NN) -10961 + (LL) 1000
1D Compatibility (HY) -9200 + (ID) 2500
Total energy: -182493.0 ( -107.03 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_2NYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NYV-query.scw
PDB file :
Tito_Scwrl_2NYV.pdb
: