Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSAPLPPRGRGTASNPLNRFAPTHSEAFDDGWEQDVPPIQLTEVREEIARTVISRNQSPDLPFDRSINPYRGCEHGCIYCYARPSHAYWD----LSPGIDFETRLIAKSNVASALEQELSKPGYRCAPINLGANTDPYQPLERERRLTRQVLEVLLRF-RH-PLTIVTKGSLILRDLDLLRELAEQNLVAVMISLTTLDDELKRILEPRAAAPSARLRAIRTLSGNGIPVGVLCSPMIPMVNDMELERLLQAARDAGARSAAYMLLRLPREVGPLFEEWLAAHYPQRAEHVMSLVRQCRGGEVYDSRFGHRFRGQGPFADLLAQRFAVAMKRLGLDRREGFGLDCSRFAVPGAQMALF |
| 1TV8 Chain:A ((12-200)) | ------------------------------------------------------------PIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFD--------EMARIAKVYAEL--GVKKIRITG-GEPLMRRD-----LDVLIAKLNQIDGIEDIGLTTNGLLLKK---HGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVV-IQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVK |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1TV8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -89693 for 1366 contacts (-65.7/contact) +
2D Compatibility (PS) -20049 + (NN) -15012 + (LL) 3412
1D Compatibility (HY) -8400 + (ID) 1450
Total energy: -131192.0 ( -96.04 by residue)
QMean score : 0.382
|
|
|