Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLNQLKASVLRDLAWLFNTTSLFDH---GPAARMPAGNSVLNYGLPALAGHTASSVD-VHAIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPLRLLLTTNLDLETGHVRVAQGERRRT
4EDV Chain:A ((197-280))
----------------------------------------------------NITLMFDGDFAGSEATLKTGQHLLQQGLNVFVIQLPSGMDPDEYIGKYGNDAFTTFVKNDKKSFAHYKVSILKDEIAHNDLSYERYLKELSHDISLMKSSILQQKAINDVAPFFNVSPEQL
General information:
TITO was launched using:
RESULT:
Template:
4EDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5235 for 475 contacts (-11.0/contact) +
2D Compatibility (PS) -8156 + (NN) 1883 + (LL) 4580
1D Compatibility (HY) -4800 + (ID) 1150
Total energy: -12878.0 ( -27.11 by residue)
QMean score : 0.078
(partial model without unconserved sides chains):
PDB file :
Tito_4EDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EDV-query.scw
PDB file :
Tito_Scwrl_4EDV.pdb
: