Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLDWTCKHHADLTLKELYALLQLRTEVFVVEQKC---PYQEVDGLDLVGDTHHLMAWRDGQLLAYLRLLDPVR-------------HEGQVVIGRVVSSSAARGQGLGHQLMERALQAAERL-WLDTPVYLSAQAHLQAYYGRYGFVAVTEV-YLEDDIPHIGMRRA
1KUX Chain:A ((35-192))
-------NEFRCLTPEDAAGVFEIEREAFISVSGNCPLNLDEVQHFLTLCPELSLGWFVEGRLVAFIIGSLWDEERLTQESLALHRPRGHSAHLHALAVHRSFRQQGKGSVLLWRYLHHVGAQPAV-RRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHCS
General information:
TITO was launched using:
RESULT:
Template:
1KUX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81219 for 995 contacts (-81.6/contact) +
2D Compatibility (PS) -14549 + (NN) 2782 + (LL) 468
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -98918.0 ( -99.42 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_1KUX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KUX-query.scw
PDB file :
Tito_Scwrl_1KUX.pdb
: